2018

Werner, Gregory R., Thomas G. Jenkins, Andrew M. Chap, and John R. Cary, "Speeding up simulations by slowing down particles: Speed-limited particle-in-cell simulation", Physics of Plasmas 25, 123512 (2018); doi.org/10.1063/1.5061683; arxiv.org/abs/1511.08225.

2017

Higuera, Adam V., and John R. Cary, "Structure-preserving second-order integration of relativistic charged particle trajectories in electromagnetic fields", Physics of Plasmas 24, 052104 (2017); doi.org/10.1063/1.4979989; arXiv:1701.05605.

2016

JR Cary, DT Abell, GI Bell. BM Cowan, JR King, D Meiser, IV Pogorelov,
GR Werner, “Select Advances in Computational Accelerator Physics”, IEEE
Trans. Nucl Science 63, 823 (2016), DOI: 10.1109/TNS.2015.2500686.

2015

K. G. Sonnad and J. R. Cary, “Near equilibrium distributions for beams
with space charge in linear and nonlinear periodic focusing systems,”
Kiran G. Sonnad and John R. Cary, Phys. Plasmas 22, 043120 (2015).

2014

E. Cormier-Michel, V.H. Ranjbar, D.L. Bruhwiler, J.R. Cary, M. Chen,
C.G.R. Geddes, G. R. Plateau, N. H. Matlis, and W.P. Leemans, “Design
principles for high quality electron beams via colliding pulses in laser
plasma accelerators,” Phys. Rev. ST/AB 17, 091301 (2014).

Carl A. Bauer, Gregory R. Werner, John R. Cary, “Origin and reduction of
wakefields in photonic crystal accelerator cavities”, Phys. Rev. ST
Accel. Beams 17, 051301 (2014).

2013

Gregory R. Werner, Carl A. Bauer, John R. Cary, “A More Accurate,
Stable, FDTD Algorithm for Electromagnetics in Anisotropic Dielectrics,”
J. Comput. Phys. 255, (2013) pp 436-455.

Bauer, Carl A., Gregory R. Werner, and John R. Cary, "A fast multigrid-based electromagnetic eigensolver for curved metal boundaries on the Yee mesh," J. Comput. Phys. 251, 524 (2013); doi.org/10.1016/j.jcp.2013.06.002; arxiv.org/abs/1301.379.

2011

D Dimitrov, R Busby, J Cary, I Ben-Zvi, T Rao, J Smedley, X Chang, J
Keister, Q Wu, E Muller, “Multiscale 3D Simulations of Charge Gain and
Transport in Diamond,” J Appl Phys, vol. 108, no. 7, (2011) 60093707.

E. Cormier-Michel, E. Esarey, C. G. R. Geddes, C. B. Schroeder, K. Paul,
P. J. Mullowney, J. R. Cary, and W. P. Leemans, “Control of focusing
fields in laser-plasma accelerators using higher-order modes,” Phys.
Rev. ST Accel. Beams 14, 031303 (2011).

C. A. Bauer, G. R Werner, and J. R. Cary, “A second-order 3D
electromagnetics algorithm for curved interfaces between anisotropic
dielectrics on a Yee mesh,” J. Comput. Phys. 230, 2060-2075 (2011),
doi:10.1016/j.jcp.2010.12.005.

2009

Baifei Shen, Xiaomei Zhang, Zhengming Sheng, MY Yu, J Cary,
“High-quality monoenergetic proton generation by sequential radiation
pressure and bubble acceleration”, Physical Review Special
Topics-Accelerators and Beams 12 (12), 121301 (2009).

J. R. Cary and A. J. Brizard, “Hamiltonian Theory of Guiding-Center
Motion,” Rev. Mod. Phys. 81, 693 (2009); DOI:10.1103/RevModPhys.81.693.

2007

G. R. Werner and J. R. Cary, "A Stable FDTD Algorithm for Non-diagonal, Anisotropic Dielectrics," J. Comp. Phys. 226, 1085-1101 (2007), doi:10.1016/j.jcp.2007.05.008.

Baifei Shen, Yuelin Li, Karoly Nemeth, Hairong Shang, Robert Soliday, Robert Crowell, Edward Frank, William Gropp, and John Cary, "Triggering wave breaking in a laser plasma bubble by a nanowire," Phys. Plasmas 14, 053115 (2007).

D. A. Dimitrov, D. L. Bruhwiler, J. R. Cary, C. G. R. Geddes, R. E. Giacone, E. Esarey and W. P. Leemans, " Particle-in-cell Simulations of Laser Pulse Propagation in Plasma Channels," Phys. Plasmas, 14, 043105 (2007).

2006

N. Xiang, J. R. Cary, D. C. Barnes, and J. A. Carlsson, "Low-noise electromagnetic particle-in-cell simulation of electron Bernstein waves," Phys. Plasma 13, 062111 (2006).

A. V. Fedotov, D. L. Bruhwiler, A. O Sidorin, D. T. Abell, I. Ben-Zvi, R. Busby, J. R. Cary, and V. N. Litvinenko, "Numerical Study of the Magnetized Friction Force," Phys. Rev. ST/AB 9, 074401 (2006).

2005

C. G. R. Geddes, Cs. Toth, J. van Tilborg, E. Esarey, C. B. Schroeder, J. Cary, and W. P. Leemans, "Guiding of relativistic laser pulses by preformed plasma channels," Phys. Rev. Lett. 95, 145002 (2005).

K. Sonnad and J. R. Cary, "Control of beam halo formation through nonlinear damping and collimation," Phys. Rev. ST/AB 8, 064202 (2005).

C. G. R. Geddes, Cs. Toth, J. van Tilborg, E. Esarey, C. B. Schroeder, D. Bruhwiler, C. Nieter, J. Cary, and W. P. Leemans, "Production of high-quality electron bunches by dephasing and beam loading in channeled and unchanneled laser plasma accelerators," Phys. Plasmas 12 (5), 056709 (2005).

J. R. Cary, R. Giacone, C. Nieter, D. L. Bruhwiler, "Clean beams from optical injection with a cleanup pulse, " Phys. Plasmas 12 (5), 056704 (2005).

2004

"Longitudinal cooling of nonneutral plasma by energy exchange," J. Lee and J.R. Cary, Phys. Plasmas (2004)

"Finding a nonlinear lattice with improved integrability using Lie-transform perturbation theory," K. Sonnad and J. R. Cary, Phys. Rev. ST/AB (2004)

2003

"Particle-in-cell simulations of tunneling ionization effects in plasma-based accelerators," D.L. Bruhwiler, D.A. Dimitrov, J.R. Cary, E. Esarey, Wim Leemans and R.E. Giacone, Phys. Plasmas 10 (2003), p. 2022.

"VORPAL: a versatile plasma simulation code", C.P. Nieter and J.R. Cary, submitted to J. Comp. Phys. (2003).

2002

"Efficiency of a Boris-like integration scheme with spatial stepping," P.H. Stoltz, J.R. Cary, G. Penn, and J. Wurtele, Phys. Rev. ST/AB 5, 094001,1-9 (2002).

2001

"Particle-in-cell simulations of plasma accelerators and electron-neutral collisions," D.L. Bruhwiler, R.E. Giacone, J.R. Cary, J.P. Verboncoeur, P. Mardahl, E. Esarey and W. P. Leeman, Phys. Rev. ST/AB 4, 101032 (2001).

"Finding four dimensional symplectic maps with reduced chaos," W.Wan and J.R. Cary, Phys. Rev. ST/AB 4, 084001 (2001).

"Physics of confinement improvement of plasmas with impurity injection in DIII-D," M. Murakami, G.R. McKee, G.L. Jackson, et. al., Nuclear Fusion 41, 317-323 (2001).

"Differentiating between colored random noise and deterministic chaos," B. Goode, J.R. Cary, I. Doxas, and W. Horton, J. Geophys. Res. 104, 21289 (2001).

1999

"The OptSolve++ software components for nonlinear optimization and root finding," Computing in Object Oriented Parallel Environments, D.L. Bruhwiler, S.G. Shasharina and J.R. Cary, Lecture Notes in Computer Science 1732, 154-163 (1999).

1997

"Comparison of C++ and Fortran 90 for object-oriented scientific programming," J.R. Cary, S.G. Shasharina, J.C. Cummings, J.V.W. Reynders, and P.J. Hinker, Comp. Phys. Comm 105, 20-36 (1997).

"Omnigenity and quasihelicity in helical plasma confinement systems," J.R. Cary and S.G. Shasharina, Phys. Plasma 4 (9), 3323-3333 (1997).

"Omnigenous stellarators," J.R. Cary and S.G. Shasharina, Plasma Phys. Reps. 23 (6) 509-511 (1997).

"Helical plasma confinement devices with good confinement properties," J.R. Cary and S.G. Shasharina, Phys. Rev. Lett. 78 (5), 674-677 (1997).

"Numerical observation of turbulence enhanced growth rates," I. Doxas and J.R. Cary, Phys. Plasmas 4 (7), 2508-2518 (1997).