Publications

The Journal of Experimental Biology

  • Connor, E.G., True, A.C. and J.P. Crimaldi, “Dynamics of an idealized respiratory-type flow: Tidal exchange across intermediate Reynolds numbers,” Physical Review Fluids 5 (9), 2020 PDF
  • Neupauer, R.M., Sather, L.J., Mays, D.C., Crimaldi, J.P. and E.J. Roth.  "Contributions of pore-scale mixing and mechanical dispersion to reaction in radial groundwater flow," Water Resources Research 56(7), 2020 PDF
  • Roth, Eric J, Roseanna M Neupauer, David C Mays, Lauren J Sather, and John P Crimaldi. "Wall Effect Mitigation Techniques for Experiments With Planar Walls,” Transport in Porous Media 132:423-441, 2020. PDF
  • Gumaste, A, G Coronas-Samano, J Hengenius, R Axman, EG Connor*, KL Baker, B Ermentrout, JP Crimaldi, and JV Verhagen. "A Comparison Between Mouse, in Silico, and Robot Odor Plume Navigation Reveals Advantages of Mouse Odor Tracking.," eNeuro 7, no. 1, 2020. PDF
  • True*, A. and J.P. Crimaldi, “High dynamic range PIV analysis of low Reynolds number inhalant flows,” Physics of Fluids 31, 103605, 2019. PDF
  • Victor, J.D., Boie, S.D., Connor*, E.G., Crimaldi, J.P., Ermentrout, G.B., and K.I. Nagel, "Olfactory navigation and the receptor nonlinearity,” Journal of Neuroscience 39 (19) 3713-3727, 2019. PDF
  • Boie S.D., Connor E.G., McHugh M., Nagel K.I., Ermentrout G.B., Crimaldi J.P., & J.D. Victor, "Information-theoretic analysis of realistic odor plumes: What cues are useful for determining location?" PLoS Computational Biology 14(7): e1006275, 2018. PDF
  • Alvarez-Salvado, E. Licata, A., Connor, E., McHugh, M., King, B., Stavropooulos, N., Crimaldi, J. and K.I. Nagel,  “Elementary sensory-motor transformation underlying olfactory navigation in walking flies,” eLife 7:e37815, 2018. PDF
  • Connor, E.G., McHugh, M.K. & J.P. Crimaldi, “Quantification of airborne odor plumes using planar laser-induced fluorescence” Experiments in Fluids 59:137, 2018. PDF
  • True, A.C. and J.P. Crimaldi. Hydrodynamics of Viscous Inhalant Flows. Physical Review E 95, no. 5, 2017. PDF
  • Pratt, K.R., True, A. and J.P. Crimaldi. Turbulent Clustering of Initially Well-mixed Buoyant Particles on a Free-surface by Lagrangian Coherent Structures. Physics of Fluids 29, no. 7, 2017. PDF
  • Shoaei, F. and J.P. Crimaldi. Effect of Instantaneous Stirring Process on Mixing Between Initially Distant Scalars in Turbulent Obstacle Wakes. Experiments in Fluids 58, no. 4, 2017. PDF
  • Bell, A.F. and J.P. Crimaldi.  Effect of steady and unsteady shear on chemoattractant plume formation around an egg: implications for rates of fertilization for motile sperm.  Journal of Marine Systems 148, 236-248, 2015. PDF
  • Pratt, K.R., Meiss, J.D. and J.P. Crimaldi.  Reaction Enhancement of Initially Distant Scalars by Lagrangian Coherent Structures.  Physics of Fluids 27, no. 3, 035106, 2015. PDF
  • Soltys, M A, and J.P. Crimaldi. Joint Probabilities and Mixing of Isolated Scalars Emitted From Parallel Jets. Journal of Fluid Mechanics 769, 130-153, 2015. PDF
  • Crimaldi, J.P. and T.R. Kawakami.  Reaction enhancement in an unsteady obstacle wake: Implications for broadcast spawning and other mixing-limited processes in marine environments.  Journal of Marine Systems 114,130-137, 2015. PDF
  • Crimaldi, J.P. and R.A. Zimmer.  The physics of broadcast spawning in benthic invertebrates. Annual Review of Marine Science 6, 141-165, 2014. (Invited review article) PDF
  • Crimaldi, J.P. and T.R. Kawakami.  Reaction of initially distant scalars in a cylinder wake. Physics of Fluids 25, 053604, 1-16, 2013. PDF
  • Koehl, M.A.R., Crimaldi, J.P., and D.E. Dombroski.  Wind chop and ship wakes determine hydrodynamic stresses on larvae settling on different microhabitats in fouling communities. Marine Ecology Progress Series 479, 47-62, 2013. PDF
  • Cullis, J. D. S., Crimaldi, J. P. and D. M. McKnight.  Hydrodynamic shear removal of the nuisance stalk-forming diatom Didymosphenia geminataLimnology & Oceanography: Fluids & Environments 3, 256-26, 2013. PDF
  • Crimaldi, J.P.  The role of structured stirring and mixing on gamete dispersal and aggregation in broadcast spawning. The Journal of Experimental Biology 215, 1031-1039, 2012. (Invited review, Cover article) PDF
  • Pontius, F.W., Crimaldi, J.P. and G.L. Amy.  Virus passage through compromised low-pressure membranes: A particle tracking model. JOURNAL of MEMBRANE SCIENCE 379, 249-259, 2011. PDF
  • Soltys, M.A. and J.P. Crimaldi.  Scalar interactions between parallel jets measured using a two-channel PLIF technique. Experiments in Fluids 50, 1625-1632, 2011. PDF
  • Larsen, L.G., Aiken, G.R., Harvey, J.W., Noe, G.B. and J.P. Crimaldi.  Using fluorescence spectroscopy to trace seasonal DOM dynamics, disturbance effects, and hydrologic transport in the Florida everglades. JOURNAL of GEOPHYSICAL RESEARCH – BIOGEOSCIENCES 11, G03001, 1-15, 2010. PDF
  • Larsen, L.G., Harvey, J.W. and J.P. Crimaldi.  Morphologic and transport properties of natural organic floc. Water Resources Research 45, W01410, 1-13, 2009. PDF
  • Larsen, L.G., Harvey, J.W., Noe, G.B. and J.P. Crimaldi.  Predicting organic floc transport dynamics in shallow aquatic ecosystems: Insights from the field, the laboratory, and numerical modeling. Water Resources Research 45, W0141, 1-13, 2009. PDF
  • Larsen, L.G., Harvey, J.W. and J.P. Crimaldi.  Predicting bed shear stress and its role in sediment dynamics and restoration potential of the everglades and other vegetated flow systems. Ecological Engineering 35, 1773-1785, 2009. PDF
  • Crimaldi, J.P., Cadwell, J.R. and J.B. Weiss.  Reaction enhancement of isolated scalars by vortex stirring. Physics of Fluids 20, 073605, 1-10, 2008. PDF
  • Crimaldi, J.P.  Planar laser induced fluorescence in aqueous flows. Experiments in Fluids 44, 851–863, 2008. (Invited Review Article) PDF
  • Dombroski, D.E. and J.P. Crimaldi.  The accuracy of acoustic Doppler velocimetry (ADV) measurements in turbulent boundary layer flows.  Limnology and Oceanography: Methods 5, 23-33, 2007. PDF
  • Larsen, L.G., J.W. Harvey and J.P Crimaldi, A delicate balance: Feedback between landscape morphology, water flow, vegetation dynamics, and sediment transport in a low-gradient, lotic peatland ecosystem, Ecological Monographs 77, 591-614, 2007. PDF
  • Crimaldi, J.P., J.R. Koseff and S.G. Monismith, “Structure of mass and momentum fields over a model aggregation of benthic filter feeders,” Biogeosciences 4, 493-532, 2007. PDF
  • Crimaldi, J.P. and J.R. Koseff.  Structure of turbulent plumes from a momentumless source in a smooth bed.  Environmental Fluid Mechanics 6, 573-592, 2006. PDF
  • Larsen, L.G. and J.P. Crimaldi.  The effect of photobleaching on PLIF.  Experiments in Fluids 41, 803-812, 2006. PDF
  • Crimaldi, J.P., Koseff, J.R. and S.G. Monismith.  A mixing-length formulation for the turbulent Prandtl number in wall-bounded flows with bed roughness and elevated scalar sources.  Physics of Fluids 18, 095102, 2006. PDF
  • Crimaldi, J.P., Hartford, J.R. and J.B. Weiss.  Reaction enhancement of point sources due to vortex stirring. Physical Review E 74, 016307, 1-4, 2006. PDF
  • Crimaldi, J.P. and H.S. Browning.  A proposed mechanism for turbulent enhancement of broadcast spawning efficiency.  Journal of Marine Systems 49, 3-18, 2004. PDF
  • Moore, P.A. and J.P. Crimaldi.  Odor landscapes and animal behavior: tracking odor plumes in different physical worlds.  Journal of Marine Systems 49, 55-64, 2004. PDF
  • Crimaldi, J.P., Thompson, J.K. and J.R. Koseff.  Hydrodynamics of larval settlement: the structure of turbulent stress events at model recruitment sites.  Limnology and Oceanography 47, 1137-1151, 2002. PDF
  • Crimaldi, J.P., Wiley, M.B. and J.R. Koseff.  The relationship between mean and instantaneous structure in turbulent passive scalar plumes.  Journal of Turbulence 3, 014, 1-24, 2002.  (This article was also selected by editors of the Institute of Physics Publishing to appear in the IOP Selectcollection.) PDF
  • Crimaldi, J.P., Koehl, M.A.R. and J.R. Koseff.  Effects of the resolution and kinematics of olfactory appendages on the interception of chemical signals in a turbulent odor plume.  Environmental Fluid Mechanics 2, 35-63, 2002. PDF
  • Koehl, M. A. R., Koseff, J. R., Crimaldi, J.P., McCay, M.G., Cooper, T., Wiley, M. B. and P. A. Moore.  Lobster Sniffing: Antennule Design and Hydrodynamic Filtering of Information in an Odor Plume. Science 294, 1948-1951, 2001. PDF
  • Crimaldi, J.P. and J.R. Koseff.  High-resolution measurements of the spatial and temporal scalar structure of a turbulent plume. Experiments in Fluids 31, 90-102, 2001. PDF
  • Crimaldi, J.P.  The effect of photobleaching and velocity fluctuations on single-point LIF measurements.  Experiments in Fluids 23, 325-330, 1997. PDF
  • Crimaldi, J.P., Britt, R.T. and W.P. Rodden.  Response of the B-2 aircraft to nonuniform spanwise turbulence.  Journal of Aircraft 30, 652-659, 1993.  PDF